Some low-lying areas like the Andheri subway were submerged, forcing authorities to divert the traffic through alternate routes, civic officials said.
The rise in water level in the tracks was also due to release of water from Barvi dam, railway officials said.
It is the highest rainfall of the season so far in 24 hours.
Heavy rains continued to lash several parts of Mumbai for the second consecutive day on Thursday, disrupting rail and air traffic, causing inconvenience to a lot of commuters.
The Assam Cricket Association (ACA) has announced a cash reward of Rs 25 lakh for the ground staff after successfully hosting three IPL matches this season despite challenging weather conditions.
The metropolis has received heavy rains in the last 24 hours.
Meanwhile, trains ran on time on the Main and Western lines of the Central Railway (CR) and Western Railway (WR) on Saturday.
Waterlogging has been reported in several parts of city.
Nearly 350 people were evacuated from Mumbai's Kurla area after the Mithi river swelled due to heavy rains. Authorities are monitoring the situation and working to ease the flow of water.
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One person was killed when a four-storeyed building in the city collapsed in Mumbai on Wednesday following heavy rains, fire brigade sources said. The building Gopal Bhavan, located in Mamletdar Wadi in suburban Malad, caved in following rains.
Heavy rains over a span of few hours flooded many parts of Nagpur city, following which more than 400 people, including 70 students from a school for the speech and hearing-impaired, were rescued, said Maharashtra Deputy Chief Minister Devendra Fadnavis on Saturday.
The south-bound traffic was diverted to another road, the fire control room official said, adding that work was on to remove the debris from the road.
Heavy rains continued to lash Mumbai and the adjoining Thane district, causing water-logging in the city and the suburbs and hitting suburban train services on the central line as the tracks were flooded.
heavy showers were likely to continue for next 48 hours, according to the India Meteorological Department.
The weatherman has predicted rainfall throughout the day with the mercury settling at 19C.
On Wednesday, while Colaba received 94.6 mm of rainfall, the weather station at Santacruz recorded a rainfall of 44.4 mm.
Kolkata Knight Riders face the threat of rain disrupting their IPL match against Punjab Kings, potentially impacting their chances of securing their first win of the season.
Incessant showers lashed Mumbai and its neighbouring areas on Wednesday morning, leading to flooding in many low-lying areas and traffic snarls on roads.
The India Meteorological Department attributed the westerly wind and moisture incursion from the Arabian Sea as the reason behind the spell.
Heavy to very heavy rains are expected in many parts of Mumbai in the next 24 hours.
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Monsoon in Mumbai is likely to get stronger and the city may experience heavy rainfall over the next 48 hours, a senior MeT official said on Thursday.
There could be occasional gusty winds reaching 40-50 kmph as per the weather bureau's prediction.
Incessant rains and water-logging slowed down traffic in Mumbai, with the IMD issuing a 'red alert', predicting very heavy showers in the city and neighbouring areas. Commuters faced water accumulation on tracks and delays in local train services.
Heavy rains in Maharashtra have caused floods, road blockages, and widespread damage, resulting in casualties and displacement. The state government is monitoring the situation and coordinating rescue efforts.
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Teams of the National Disaster Response Force (NDRF) were roped in to rescue hundreds of stranded people, they said.
As heavy rains batter several parts of west and south India, the meteorological department on Friday said isolated extremely heavy falls are very likely over Konkan, Goa and central Maharashtra in the next two days.
Road, rail and air services were affected due to the first heavy rainfall of this season.
Heavy rains lashed many parts of Gujarat on Thursday, disrupting rail and vehicular traffic at several places.
As per IMD classification, "heavy to very heavy rainfall" means precipitation ranging from 64.5 mm to 204.4 mm in a period of 24 hours.
The BCCI press conference scheduled at 1.30pm in Mumbai is 'expected to be delayed owing to weather disruptions'.
The orange alert implies that authorities should be ready to handle situations arising out of severe weather.
A school bus carrying six children and two staffers got stuck on a waterlogged road in Mumbai after heavy rains. Police rescued them. Schools declared a half-day due to the rains.